How to Create and Use Intuit 1099 E-File Service in QuickBooks Desktop

3 min readApr 17, 2025

If your business hires independent contractors or freelancers, you’re likely required to file 1099-NEC or 1099-MISC forms with the IRS. Luckily, if you’re using QuickBooks Desktop, the built-in Intuit 1099 E-File Service simplifies the entire process — from form creation to electronic submission.

In this guide, we’ll walk you through how to create and e-file 1099s using QuickBooks Desktop, ensuring you meet IRS deadlines with ease and accuracy.

What Is Intuit’s 1099 E-File Service?

The Intuit 1099 E-File Service is a QuickBooks-integrated tool that lets you electronically file 1099-NEC and 1099-MISC forms with the IRS. It also sends contractor copies via mail or email, helping you stay compliant without all the manual effort.

With just a few steps, you can set up your vendors, generate forms, and e-file — all directly through QuickBooks Desktop.

Step-by-Step: How to Create and File 1099s in QuickBooks Desktop

✅ Step 1: Make Sure Your QuickBooks Desktop Is Updated

Before you begin, ensure you’re using the latest version of QuickBooks Desktop. Updates include the most recent IRS form changes and e-file compatibility.

✅ Step 2: Prepare Your Vendor Information

Go to Vendors > Vendor Center and make sure each contractor:

  • Is marked as eligible for a 1099
  • Has complete name, address, and Taxpayer Identification Number (TIN)
  • Has submitted a W-9 form

✅ Step 3: Categorize Payments Properly

Only certain types of payments (like services, rent, and legal fees) require 1099 reporting. Make sure the expense categories (Chart of Accounts) are mapped correctly for 1099s.

✅ Step 4: Launch the 1099 Wizard

QuickBooks Desktop provides a step-by-step 1099 Wizard to guide you through:

  • Reviewing vendor information
  • Mapping accounts used to pay contractors
  • Verifying payment thresholds
  • Previewing and printing your 1099 forms

✅ Step 5: Use the Intuit 1099 E-File Service

Once the forms are reviewed:

  1. Click “E-File” at the end of the wizard
  2. Sign in with your Intuit account
  3. Choose your e-file options (IRS only, contractor delivery, or both)
  4. Submit forms electronically and receive a confirmation

You’ll also be able to track the filing status and download copies for your records.

Key Benefits of 1099 E-Filing with QuickBooks Desktop

💡 Saves Time: No printing, stuffing envelopes, or trips to the post office.

💡 Reduces Errors: Automated data entry and IRS-compliant formatting.

💡 Meets Deadlines: Instantly file with the IRS and ensure contractors receive copies on time.

💡 Secure & Verified: QuickBooks is an IRS-authorized e-file provider, and your data is transmitted securely.

Important IRS Deadlines

  • January 31: Deadline to file 1099-NEC with the IRS and deliver contractor copies
  • February 28: Paper filing deadline for 1099-MISC (March 31 if e-filed)
  • Avoid late filing penalties by getting your forms submitted early!

Need Help with QuickBooks Desktop 1099 E-Filing?

Running into issues? Want expert guidance? The QuickBooks support team can walk you through setup, troubleshooting, and e-filing.

📞 Call Support: 855–389–9729
Available to help with 1099 setup, vendor mapping, form submission, and more.

Final Thoughts

The Intuit 1099 E-File Service in QuickBooks Desktop gives you everything you need to stay organized, compliant, and stress-free during tax season. By automating the process and securely filing your forms online, you avoid penalties, save time, and simplify your workflow.

If you’re already using QuickBooks Desktop, there’s no need for third-party tools. Just launch the 1099 wizard, follow the prompts, and file with confidence.

👉 Get started at https://intuit-1099-e-file-service.webflow.io/
📞 Need assistance? Call 855–389–9729

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